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Empirical transition matrices

countEmp()
Empirical transition counts for univariate dyadic sequences
countEmpBivariate()
Empirical transition counts for bivariate dyadic sequences

Transition probability estimation

mleEstimation()
Maximum likelihood estimation of transition probabilities

Pattern identification

univariatePattern()
Univariate pattern identification for dyadic Markov chains
bivariateCase()
Bivariate case identification for dyadic Markov chains
partialPattern()
Partial bivariate pattern identification by AIC
completePattern()
Complete bivariate pattern identification by AIC

Example data

dyadic_univariate_example
Synthetic univariate dyadic sequence example
dyadic_bivariate_example
Synthetic bivariate dyadic sequence example